U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX433980: GSM1308342: Col-0 seedling, biological replicate 1; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 6.1M spots, 473M bases, 302.8Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Seedling transcriptomes of Arabidopsis thaliana HULK mutants
show Abstracthide Abstract
We produced RNA-seq reads from messenger RNA isolated from aerial seedling tissue for Arabidopsis thaliana mutants in the HULK gene family. The read data were generated with biological replication (two replicates). The resulting RNA-seq data provide a resource to assess the function of HULK genes in the control of downstream gene expression in A. thaliana. Overall design: Examination of RNA transcript levels in HULK T-DNA mutants (and mutant combinations therein) in Arabidopsis thaliana.
Sample: Col-0 seedling, biological replicate 1
SAMN02585107 • SRS534131 • All experiments • All runs
Library:
Instrument: Illumina Genome Analyzer IIx
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Aerial seedling tissue was frozen in liquid nitrogen, ground to a fine power in liquid nitrogen, and RNA was extracted with the Plant Reagent (Invitrogen using the manufacturer's recommendations). Specific details are as given in Gan et al. 2011. Nature, 477:419-23; see Supplementary Information Section 7. Illumina non-strand-specific (a minor adaptation of the Illumina mRNA-seq methods as reported by Gan et al. 2011. Nature, 477:419-23; see Supplementary Information Section 7).
Experiment attributes:
GEO Accession: GSM1308342
Links:
External link:
Runs: 1 run, 6.1M spots, 473M bases, 302.8Mb
Run# of Spots# of BasesSizePublished
SRR11192056,064,420473M302.8Mb2015-07-22

ID:
610638

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...